UCD_Gh_M_000352, UCD_Gh_M_000352 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000352
AliasGh_M_000352
Tm1_Mira454_Contig_1479_457
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGGTTGTCTTTACAGTCTACTTTTTCCTGTATGGAAGACTTTATTTGTCATTGAGTGGTTT AGAGGAGGCAATACTGAAGTATGCTTCAGCTAGGGGAAAT
3' Flanking SequenceATTCTCTAAGGGCGGCCATGGCTTCACAGTCTATAGTTCAATTAGGTATCTTAACTGTAC TACCCATGGTCATGGAGATTGGATTGGAGAGAGGATTTAG
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:83323812..83324012 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:104818243..104818443 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:47819960..47820160 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr11chromosomeAt_chr11:19200660..19200860 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:75010399..75010599 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:88584904..88585104 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:90010759..90010959 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:88758156..88758356 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:83870078..83870278 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:83449734..83449934 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:85270031..85270231 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:84796955..84797155 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:92264400..92264600 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:86479118..86479318 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:91739024..91739224 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:55399423..55399623 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:24502022..24502222 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:78859483..78859683 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:16576584..16576784 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:14592345..14592545 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:12275069..12275269 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:16912906..16913106 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:13535718..13535918 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:10613146..10613346 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:13385012..13385212 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr10chromosomeChr10:121346652..121346852 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000352 ID=UCD_Gh_M_000352; Name=UCD_Gh_M_000352; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GGTTGTCTTTACAGTCTACTTTTTCCTGTATGGAAGACTTTATTTGTCAT
TGAGTGGTTTAGAGGAGGCAATACTGAAGTATGCTTCAGCTAGGGGAAAT
[A/G]ATTCTCTAAGGGCGGCCATGGCTTCACAGTCTATAGTTCAATTAG
GTATCTTAACTGTACTACCCATGGTCATGGAGATTGGATTGGAGAGAGGA
TTTAG