UCD_Gh_M_000337, UCD_Gh_M_000337 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000337
AliasGh_M_000337
Tm1_Mira454_Contig_1393_960
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceCGATCCACGAGCAACCAGAGCGTAGAGTATCGCCATCTGACTTCTTCTGCAGATCGCTTC GACCAACGTATCCAAAACACAGTACCTTTTCTCCTCACGA
3' Flanking SequenceCGGAGAACTCCTTTTTCAACCAAGAATAATGGATTGTGAATTGATTAAATTGATAGAAGC TGAAGGAAATTACAGATCATTCAAGAAAATGAAAAACAAT
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:4400718..4400918 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:4255087..4255286 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:64785525..64785725 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:4591082..4591282 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:4736946..4737146 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:4531068..4531268 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:4648138..4648338 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:4525036..4525236 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:4619097..4619297 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:4717542..4717742 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:4582421..4582621 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:4889066..4889266 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:4589415..4589615 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:4682380..4682580 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:4276726..4276925 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:4393674..4393874 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000337 ID=UCD_Gh_M_000337; Name=UCD_Gh_M_000337; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CGATCCACGAGCAACCAGAGCGTAGAGTATCGCCATCTGACTTCTTCTGC
AGATCGCTTCGACCAACGTATCCAAAACACAGTACCTTTTCTCCTCACGA
[C/T]CGGAGAACTCCTTTTTCAACCAAGAATAATGGATTGTGAATTGAT
TAAATTGATAGAAGCTGAAGGAAATTACAGATCATTCAAGAAAATGAAAA
ACAAT