UCD_Gh_M_000311, UCD_Gh_M_000311 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000311
AliasGh_M_000311
Tm1_Mira454_Contig_1267_136
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceTTTACTAATATTCAAATATAATCTCTAAGCATATACATAGACAAATATCAACCGGAAGAA ATTAATAAACGAATAAAAATAGTGAAAGAATTGAGTGAGA
3' Flanking SequenceAAGATGAAGACGGGGGTTAATAGTAGTAATGGTAATGGTTTCATTATTATTTTCCACAGT GCCAACTTGATGTAGGAACACAGCTCAGGTAATGGCACCA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:109867380..109867580 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:119464226..119464426 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold149.1supercontigscaffold149.1:1393370..1393570 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:95286063..95286263 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:113122810..113123010 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:116017968..116018168 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:115938847..115939047 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:111846819..111847019 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:110546643..110546843 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:111616683..111616883 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:110060077..110060277 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:119517217..119517417 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:110668041..110668241 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:117833084..117833284 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:122092362..122092562 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:123113257..123113457 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000311 ID=UCD_Gh_M_000311; Name=UCD_Gh_M_000311; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
TTTACTAATATTCAAATATAATCTCTAAGCATATACATAGACAAATATCA
ACCGGAAGAAATTAATAAACGAATAAAAATAGTGAAAGAATTGAGTGAGA
[C/G]AAGATGAAGACGGGGGTTAATAGTAGTAATGGTAATGGTTTCATT
ATTATTTTCCACAGTGCCAACTTGATGTAGGAACACAGCTCAGGTAATGG
CACCA