UCD_Gh_M_000321, UCD_Gh_M_000321 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000321
AliasGh_M_000321
Tm1_Mira454_Contig_1319_1288
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
5' Flanking SequenceAGCAGATTGAGCCTTCTTCTCCTCCGCCATTTCTTTGAGTTGAAACAGTGAAGGGGAAAG ATATTGCTAAAGGAGAGGAGAGTTGAGGGGCCGCCTTTGG
3' Flanking SequenceTAGGACTGAAAAGAGTGAAAATAGGAAGGGGGCGAAACGTGAGGCKTTYCCCAATCTATT TCTCCTTTATAAATGCAAACCCTGCTTCCGCMTTGTTGGC
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018217.1chromosomeCM018217.1:49332514..49332713 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:42896954..42897152 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold154.1supercontigscaffold154.1:1618233..1618432 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:42891347..42891546 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:48867529..48867728 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:50177557..50177756 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:49846844..49847043 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:49120926..49121125 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:47728865..47729064 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:50121006..50121205 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:48546319..48546518 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:52740300..52740499 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D03chromosomeD03:51120289..51120488 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:44987534..44987732 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_03chromosomeChr_03:27203401..27203600 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:23409776..23409975 +Gossypium gossypioides (D6) genome ISU_v1n/a
E02chromosomeE02:83467386..83467584 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000321 ID=UCD_Gh_M_000321; Name=UCD_Gh_M_000321; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
AGCAGATTGAGCCTTCTTCTCCTCCGCCATTTCTTTGAGTTGAAACAGTG
AAGGGGAAAGATATTGCTAAAGGAGAGGAGAGTTGAGGGGCCGCCTTTGG
KTAGGACTGAAAAGAGTGAAAATAGGAAGGGGGCGAAACGTGAGGCKTTY
CCCAATCTATTTCTCCTTTATAAATGCAAACCCTGCTTCCGCMTTGTTGG
C