UCD_Gh_M_000251, UCD_Gh_M_000251 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000251
AliasGh_M_000251
Tm1_Mira454_Contig_839_1583
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceCTAACACGGGTCGTTAGCTGGAGGAACAGATTCTATGTAGTTATTAACTGGCTTACAACT TCTGTATTTGGTCGTGACATTAGCAGATTATAGATTCAAC
3' Flanking SequenceAGAGTCAAATTTTACCGGGTTTTAGATCCAAATACTTTCATCCTATTCCATAAGTAATAC TATTTAACTTCTATGTTTAACAAAATACTAAAATAAAACT
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018210.1chromosomeCM018210.1:56874772..56874972 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:63365639..63365839 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr6chromosomeAt_chr6:43472030..43472230 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:55914281..55914481 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:60887277..60887477 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:62942981..62943181 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:62572958..62573158 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:59499866..59500066 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A09chromosomeGbar_A09:57523487..57523687 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:58832902..58833102 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:58409733..58409933 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:61446691..61446891 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:58705706..58705906 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:63920795..63920995 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:62833894..62834094 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:66030435..66030635 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000251 ID=UCD_Gh_M_000251; Name=UCD_Gh_M_000251; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CTAACACGGGTCGTTAGCTGGAGGAACAGATTCTATGTAGTTATTAACTG
GCTTACAACTTCTGTATTTGGTCGTGACATTAGCAGATTATAGATTCAAC
[A/C]AGAGTCAAATTTTACCGGGTTTTAGATCCAAATACTTTCATCCTA
TTCCATAAGTAATACTATTTAACTTCTATGTTTAACAAAATACTAAAATA
AAACT