|
|
Marker Overview
| Name | UCD_Gh_M_000254 |
|---|
| Alias | Gh_M_000254
Tm1_Mira454_Contig_861_107
Gh_M_000254_Class_III
|
|---|
| dbSNP ID | N/A |
|---|
| Type | SNP |
|---|
| SNP Alleles | A/T |
|---|
| 5' Flanking Sequence | AAAAAAATGAAATMYAATTTACGTAAAAAATAAGTAAWWCTAAAAGACTCTCTACAAAGA
CTAAACATTTWGAATAAGAAAAAAGAAAGAATAAAAAACA |
|---|
| 3' Flanking Sequence | GGGGTTTAAGAAAGAAGAATAATAAAGAAATGATAAGGCCTGCTTGCTAGCAAATATAAC
CTATCACCTTATTTATTTATTTATGTAGAGCAGCATCCTT |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | Acala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
|
|---|
| Source Type | RNA |
|---|
| Publication | [view all] |
|---|
| Contact | Ashrafi, Hamid
|
|---|
| Comment | class_III: putative SNPs in the vicinity of more than one homeo-SNP in the contig but with one homeo-SNP within the 100 bases on each side of the SNP position |
|---|
Publications
| Year | Publication |
|---|
| 2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
Sequence
>UCD_Gh_M_000254 ID=UCD_Gh_M_000254; Name=UCD_Gh_M_000254; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
AAAAAAATGAAATMYAATTTACGTAAAAAATAAGTAAWWCTAAAAGACTC
TCTACAAAGACTAAACATTTWGAATAAGAAAAAAGAAAGAATAAAAAACA
WGGGGTTTAAGAAAGAAGAATAATAAAGAAATGATAAGGCCTGCTTGCTA
GCAAATATAACCTATCACCTTATTTATTTATTTATGTAGAGCAGCATCCT
T
|
