UCD_Gh_M_000253, UCD_Gh_M_000253 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000253
AliasGh_M_000253
Tm1_Mira454_Contig_853_1348
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTATTATAATACGTGGAAATGAAATGACAAAGCAAYCCCTTGTATATTAAGCTACTTATAT ATATATGACAATGATCATCAAACTACATTGCATGGCAACT
3' Flanking SequenceACAAAAGGGAAACAAAACTTCAGAGGCAAATTTGCCGCACTCAGAAAAACTTGACTATCA CTCATAGTTACATATTTACTACCATGCCGGAATAGAAGGG
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:55146183..55146385 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:50559804..50560006 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold104.1supercontigscaffold104.1:808483..808683 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:54335704..54335904 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:58254765..58254965 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:57483026..57483226 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:57878282..57878482 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:54190407..54190607 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:55536171..55536373 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:56116033..56116235 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:56101272..56101474 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:57092418..57092620 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:56149625..56149827 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:58475045..58475245 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:902237..902439 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:54876496..54876698 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01_3417760chromosomeChr01_3417760:1211..1413 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:40301889..40302091 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000253 ID=UCD_Gh_M_000253; Name=UCD_Gh_M_000253; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
TATTATAATACGTGGAAATGAAATGACAAAGCAAYCCCTTGTATATTAAG
CTACTTATATATATATGACAATGATCATCAAACTACATTGCATGGCAACT
YACAAAAGGGAAACAAAACTTCAGAGGCAAATTTGCCGCACTCAGAAAAA
CTTGACTATCACTCATAGTTACATATTTACTACCATGCCGGAATAGAAGG
G