UCD_Gh_M_000252, UCD_Gh_M_000252 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000252
AliasGh_M_000252
Tm1_Mira454_Contig_853_1341
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTGGTTTGTATTATAATACGTGGAAATGAAATGACAAAGCAAYCCCTTGTATATTAAGCTA CTTATATATATATGACAATGATCATCAAACTACATTGCAT
3' Flanking SequenceGCAACTTACAAAAGGGAAACAAAACTTCAGAGGCAAATTTGCCGCACTCAGAAAAACTTG ACTATCACTCATAGTTACATATTTACTACCATGCCGGAAT
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:55146176..55146378 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:50559797..50559999 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold104.1supercontigscaffold104.1:808490..808690 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:54335697..54335897 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:58254758..58254958 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:57483019..57483219 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:57878275..57878475 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:54190400..54190600 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:55536164..55536366 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:56116026..56116228 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:56101265..56101467 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:57092411..57092613 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:56149618..56149820 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:58475038..58475238 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:902244..902446 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:54876489..54876691 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01_3417760chromosomeChr01_3417760:1218..1420 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:40301882..40302084 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000252 ID=UCD_Gh_M_000252; Name=UCD_Gh_M_000252; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
TGGTTTGTATTATAATACGTGGAAATGAAATGACAAAGCAAYCCCTTGTA
TATTAAGCTACTTATATATATATGACAATGATCATCAAACTACATTGCAT
RGCAACTTACAAAAGGGAAACAAAACTTCAGAGGCAAATTTGCCGCACTC
AGAAAAACTTGACTATCACTCATAGTTACATATTTACTACCATGCCGGAA
T