UCD_Gh_M_000158, UCD_Gh_M_000158 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000158
AliasGh_M_000158
Tm1_Mira454_Contig_388_407
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceAAAATGGCTGTTTCCCTTTCTCTGTTCTACCTGAGTTATGGAATTGGGTGTATAACTACC TTTCCAGTCGCTCGATTTGTTTCAATGTATGAGAAAGCCT
3' Flanking SequenceGTCAACTTGAGTAAATGGGAATGGTCCCCGGGGATCAACAACCGGCTTCACTTTCCCACT CTCTAAATATGAATTTAGCTTCTTAAGAACCTCTCCCTTA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:92099843..92100043 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:120577989..120578189 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:41322134..41322334 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:86440395..86440595 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:98537137..98537337 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:97624433..97624633 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:95562807..95563007 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:90838332..90838532 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:91299714..91299914 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:93508159..93508359 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:93330437..93330637 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:99525379..99525579 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:93767332..93767532 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:99136621..99136821 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:15054800..15055000 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000158 ID=UCD_Gh_M_000158; Name=UCD_Gh_M_000158; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
AAAATGGCTGTTTCCCTTTCTCTGTTCTACCTGAGTTATGGAATTGGGTG
TATAACTACCTTTCCAGTCGCTCGATTTGTTTCAATGTATGAGAAAGCCT
[C/G]GTCAACTTGAGTAAATGGGAATGGTCCCCGGGGATCAACAACCGG
CTTCACTTTCCCACTCTCTAAATATGAATTTAGCTTCTTAAGAACCTCTC
CCTTA