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Marker Overview
| Name | UCD_Gh_M_000146 |
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| Alias | Gh_M_000146_Class_II
Gh_M_000146
Tm1_Mira454_Contig_344_1319
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | AGTCTTTGATGGCTGACAGCGCCGCCAGATCAACGGCACTGATCTTGGATCGTTTCTGAA
ATGCTAGAACAGACGCATTGACAGAAAACAGCAGAAAAAG |
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| 3' Flanking Sequence | AGGAGGAAAAAACATGGCTGGTACTGGTAAGCCATTGCTGAATCAAACATAAAAAAGAAA
ATAACCCTGAAAAACAAGCTCATAAGTCTTTAAGAGAGAA |
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| Species | Gossypium hirsutum |
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| Germplasm | Acala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
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| Source Type | RNA |
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| Publication | [view all] |
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| Contact | Ashrafi, Hamid
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| Comment | class_II: Only SNPs with one homeo-SNP in a position on the contig outside of 100 bases window on each side of the putative SNP position |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
Sequence
>UCD_Gh_M_000146 ID=UCD_Gh_M_000146; Name=UCD_Gh_M_000146; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
AGTCTTTGATGGCTGACAGCGCCGCCAGATCAACGGCACTGATCTTGGAT
CGTTTCTGAAATGCTAGAACAGACGCATTGACAGAAAACAGCAGAAAAAG
[A/G]AGGAGGAAAAAACATGGCTGGTACTGGTAAGCCATTGCTGAATCA
AACATAAAAAAGAAAATAACCCTGAAAAACAAGCTCATAAGTCTTTAAGA
GAGAA
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