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Marker Overview
Name | UCD_Gh_M_000115 |
Alias | Gh_M_000115 Tm1_Mira454_Contig_164_1295 Gh_M_000115_Class_II
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dbSNP ID | N/A |
Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | AAATGTAGGGAGAAAAACAGAGTAATGCCGTCTACAGGAAGTTCGAATAGGAATGATCCG
TGAATTCACCAATCCTTCCATCAAAAAGTATATATATTTT |
3' Flanking Sequence | CTAAAAGGCTTGGTTTGGAGAATTGTGGTCACTGTTTTGTATTCGGTCCTGTGTATCCAG
ATCTCTCCTCTGTGTCAGTCTGTATGTATATTCTCAAGTT |
Species | Gossypium hirsutum |
Germplasm | Acala Maxxa PD-1 Sealand 542 Fibermax 832 TM-1
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Source Type | RNA |
Publication | [view all] |
Contact | Ashrafi, Hamid
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Comment | class_II: Only SNPs with one homeo-SNP in a position on the contig outside of 100 bases window on each side of the putative SNP position |
Publications
Year | Publication |
2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
Sequence
>UCD_Gh_M_000115 ID=UCD_Gh_M_000115; Name=UCD_Gh_M_000115; organism=Gossypium hirsutum; type=genetic_marker; length=205bp AAATGTAGGGAGAAAAACAGAGTAATGCCGTCTACAGGAAGTTCGAATAG GAATGATCCGTGAATTCACCAATCCTTCCATCAAAAAGTATATATATTTT [C/T]CTAAAAGGCTTGGTTTGGAGAATTGTGGTCACTGTTTTGTATTCG GTCCTGTGTATCCAGATCTCTCCTCTGTGTCAGTCTGTATGTATATTCTC AAGTT
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