UCD_Gh_M_000104, UCD_Gh_M_000104 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000104
AliasGh_M_000104
Tm1_Mira454_Contig_140_228
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceACTTCTCTGTTTAAACACATCAAGGATTACTCTCTTATGCAGAAACGGCAGTCTCTTTAA AGATATTATTAGCAAAACACATCTGTGGATGAAGACGGCC
3' Flanking SequenceTGCCATTGCAACCTGTATGGAAACTGGCTCCCATTCCGCCACATCTTTCCTGCAATCACT GTTCTTAACTGCAACGATGTCCAACTGGTTCGCACCACCC
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:31130164..31130364 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:29658540..29658740 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:31960097..31960297 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:31899262..31899462 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:32038913..32039113 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:31185377..31185577 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:31873399..31873599 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:31495521..31495721 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:31681654..31681854 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:31434855..31435055 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:31547796..31547996 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:32047435..32047635 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:31514438..31514638 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:32592983..32593183 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:29807322..29807522 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:30452064..30452264 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:25646532..25646732 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:31715397..31715597 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:24190414..24190614 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:24619428..24619628 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000104 ID=UCD_Gh_M_000104; Name=UCD_Gh_M_000104; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
ACTTCTCTGTTTAAACACATCAAGGATTACTCTCTTATGCAGAAACGGCA
GTCTCTTTAAAGATATTATTAGCAAAACACATCTGTGGATGAAGACGGCC
[C/T]TGCCATTGCAACCTGTATGGAAACTGGCTCCCATTCCGCCACATC
TTTCCTGCAATCACTGTTCTTAACTGCAACGATGTCCAACTGGTTCGCAC
CACCC