UCD_Gh_M_000103, UCD_Gh_M_000103 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000103
AliasGh_M_000103
Tm1_Mira454_Contig_140_222
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCTTTGGACTTCTCTGTTTAAACACATCAAGGATTACTCTCTTATGCAGAAACGGCAGTCT CTTTAAAGATATTATTAGCAAAACACATCTGTGGATGAAG
3' Flanking SequenceCGGCCTTGCCATTGCAACCTGTATGGAAACTGGCTCCCATTCCGCCACATCTTTCCTGCA ATCACTGTTCTTAACTGCAACGATGTCCAACTGGTTCGCA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:31130158..31130358 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:29658534..29658734 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:31960091..31960291 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:31899256..31899456 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:32038907..32039107 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:31185371..31185571 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:31873393..31873593 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:31495515..31495715 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:31681648..31681848 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:31434849..31435049 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:31547790..31547990 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:32047429..32047629 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:31514432..31514632 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:32592977..32593177 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:29807316..29807516 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:30452058..30452258 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:25646526..25646726 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:31715391..31715591 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:24190408..24190608 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:24619422..24619622 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000103 ID=UCD_Gh_M_000103; Name=UCD_Gh_M_000103; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CTTTGGACTTCTCTGTTTAAACACATCAAGGATTACTCTCTTATGCAGAA
ACGGCAGTCTCTTTAAAGATATTATTAGCAAAACACATCTGTGGATGAAG
[A/G]CGGCCTTGCCATTGCAACCTGTATGGAAACTGGCTCCCATTCCGC
CACATCTTTCCTGCAATCACTGTTCTTAACTGCAACGATGTCCAACTGGT
TCGCA