|
|
Marker Overview
| Name | UCD_Gh_M_000102 |
|---|
| Alias | Gh_M_000102
Tm1_Mira454_Contig_136_1119
Gh_M_000102_Class_II
|
|---|
| dbSNP ID | N/A |
|---|
| Type | SNP |
|---|
| SNP Alleles | A/G |
|---|
| 5' Flanking Sequence | ATGCATCCCCTAAGATGGGGCTTGCCCTTGCTCTCAAGCCTTGACGGGAAGATCTCATTT
TGGATTCCATATTTTTAAATTTTGATTTGTCCTTTTCCCC |
|---|
| 3' Flanking Sequence | AACCCTTGGGAGGGTGTTATTCACCCAGATTATTTTGTATCGAAAGATTATAAAAGAAAA
TTGTTCAGATACTGAGTTGATGAATGTTTTCACCAGATCA |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | Acala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
|
|---|
| Source Type | RNA |
|---|
| Publication | [view all] |
|---|
| Contact | Ashrafi, Hamid
|
|---|
| Comment | class_II: Only SNPs with one homeo-SNP in a position on the contig outside of 100 bases window on each side of the putative SNP position |
|---|
Alignments
The following features are aligned
Publications
| Year | Publication |
|---|
| 2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
Sequence
>UCD_Gh_M_000102 ID=UCD_Gh_M_000102; Name=UCD_Gh_M_000102; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
ATGCATCCCCTAAGATGGGGCTTGCCCTTGCTCTCAAGCCTTGACGGGAA
GATCTCATTTTGGATTCCATATTTTTAAATTTTGATTTGTCCTTTTCCCC
[A/G]AACCCTTGGGAGGGTGTTATTCACCCAGATTATTTTGTATCGAAA
GATTATAAAAGAAAATTGTTCAGATACTGAGTTGATGAATGTTTTCACCA
GATCA
|
