|
Marker Overview
Name | UCD_Gh_M_000090 |
Alias | Gh_M_000090 Tm1_Mira454_Contig_35_297 Gh_M_000090_Class_II
|
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | C/T |
5' Flanking Sequence | TTTTTGTTTTTCTCTTTATTGTTCTTCAGCTAGCTTTGAATCTCCCAAATCTTTGGTCTT
TTCTAGCTAAGAAATCCTGGGTTTCCTTTGGTTTTTTTTT |
3' Flanking Sequence | ATTTGTTCTTAAATATCGAATCTTTTTTTCTTTCCCTGGATCTCGTACTGAGTCCATGAA
GAACTCAGTTGCTACACAATCCTTTCCCAAGCTTGTTTCC |
Species | Gossypium hirsutum |
Germplasm | Acala Maxxa PD-1 Sealand 542 Fibermax 832 TM-1
|
Source Type | RNA |
Publication | [view all] |
Contact | Ashrafi, Hamid
|
Comment | class_II: Only SNPs with one homeo-SNP in a position on the contig outside of 100 bases window on each side of the putative SNP position |
Alignments
The following features are aligned
Publications
Year | Publication |
2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
Sequence
>UCD_Gh_M_000090 ID=UCD_Gh_M_000090; Name=UCD_Gh_M_000090; organism=Gossypium hirsutum; type=genetic_marker; length=205bp TTTTTGTTTTTCTCTTTATTGTTCTTCAGCTAGCTTTGAATCTCCCAAAT CTTTGGTCTTTTCTAGCTAAGAAATCCTGGGTTTCCTTTGGTTTTTTTTT [C/T]ATTTGTTCTTAAATATCGAATCTTTTTTTCTTTCCCTGGATCTCG TACTGAGTCCATGAAGAACTCAGTTGCTACACAATCCTTTCCCAAGCTTG TTTCC
|