|
|
Marker Overview
| Name | UCD_Gh_M_000078 |
|---|
| Alias | Gh_M_000078
Tm1_Mira454_Contig_4523_3017
Gh_M_000078_Class_II
|
|---|
| dbSNP ID | N/A |
|---|
| Type | SNP |
|---|
| SNP Alleles | T/A |
|---|
| 5' Flanking Sequence | TATCCATAATAGAAAGCGCACACACACACCACCCCCCAGCACTGTCCAAACAACGTTCAC
TTGCTCTATACCTTTTTTACTCTTTTCTTGTATGATTTTG |
|---|
| 3' Flanking Sequence | GWGAGAGAGAGAGAGAAGAGAGAGAAATAAGCGTTTAGAGAGTAAGGTCTTTTACAAGTA
AAACATCTTCTCTCTATCAACCACAAGCTCTACCTACCAA |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | Acala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
|
|---|
| Source Type | RNA |
|---|
| Publication | [view all] |
|---|
| Contact | Ashrafi, Hamid
|
|---|
| Comment | class_II: Only SNPs with one homeo-SNP in a position on the contig outside of 100 bases window on each side of the putative SNP position |
|---|
Alignments
The following features are aligned
Publications
| Year | Publication |
|---|
| 2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
Sequence
>UCD_Gh_M_000078 ID=UCD_Gh_M_000078; Name=UCD_Gh_M_000078; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
TATCCATAATAGAAAGCGCACACACACACCACCCCCCAGCACTGTCCAAA
CAACGTTCACTTGCTCTATACCTTTTTTACTCTTTTCTTGTATGATTTTG
WGWGAGAGAGAGAGAGAAGAGAGAGAAATAAGCGTTTAGAGAGTAAGGTC
TTTTACAAGTAAAACATCTTCTCTCTATCAACCACAAGCTCTACCTACCA
A
|
