TAMU_Gb379_000134, TAMU_Gb379_000134 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_Gb379_000134
AliasGb379_000134
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAGAATCTTGCAGGTAAGTGTGAAATTCGAGAGAATTACGTGGAAATGAAG
3' Flanking SequenceGCAAAGCAAGAAGATAAATGAGACTAAGGAAGAATAGTTGTCAAGGATGA
SpeciesGossypium barbadense
Germplasm3-79
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_I: no additional polymorphism was found to exist in the same contig
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:39865021..39865121 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:37640305..37640405 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_09chromosomeD10_09:11953637..11953737 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:12114528..12114628 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:37710517..37710617 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:39743332..39743432 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:39462583..39462683 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:39500587..39500687 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:37565048..37565148 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:38332766..38332866 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:40852923..40853023 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:38531989..38532089 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:39949742..39949842 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:39137061..39137161 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:41174958..41175058 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr06chromosomechr06:31207405..31207505 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:26259857..26259957 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:39558260..39558360 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:28816579..28816679 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:26602615..26602715 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>TAMU_Gb379_000134 ID=TAMU_Gb379_000134; Name=TAMU_Gb379_000134; organism=Gossypium barbadense; type=genetic_marker; length=105bp
AGAATCTTGCAGGTAAGTGTGAAATTCGAGAGAATTACGTGGAAATGAAG
[C/T]GCAAAGCAAGAAGATAAATGAGACTAAGGAAGAATAGTTGTCAAG
GATGA