TAMU_Gb379_000071, TAMU_Gb379_000071 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_Gb379_000071
AliasGb379_000071
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAACTTACAAACAATTTAACATATCAATGTCGAACACATACTAATATTCAA
3' Flanking SequenceGCTCATACCCGAGTCTCTGACATAGCTGTTGACTTCTTTTGAGCCTAAAT
SpeciesGossypium barbadense
Germplasm3-79
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_I: no additional polymorphism was found to exist in the same contig
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:8588600..8588700 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:8144647..8144747 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:8080115..8080215 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:45828089..45828189 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:39216368..39216468 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:8117201..8117301 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:8440589..8440689 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:8093847..8093947 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:8394785..8394885 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:8247047..8247147 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:8436361..8436461 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:8277257..8277357 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:8566043..8566143 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:8582242..8582342 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:8399297..8399397 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:8528045..8528145 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:45498104..45498204 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:8227028..8227128 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:7540233..7540333 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:7739773..7739873 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:8181859..8181959 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:6790808..6790908 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:5699256..5699356 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:7065020..7065120 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>TAMU_Gb379_000071 ID=TAMU_Gb379_000071; Name=TAMU_Gb379_000071; organism=Gossypium barbadense; type=genetic_marker; length=105bp
AACTTACAAACAATTTAACATATCAATGTCGAACACATACTAATATTCAA
[C/T]GCTCATACCCGAGTCTCTGACATAGCTGTTGACTTCTTTTGAGCC
TAAAT