TAMU_Gb379_000030, TAMU_Gb379_000030 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_Gb379_000030
AliasGb379_000030
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceTATTTATTTATTTATTATTACACTAGAATTTCACACATAGCAAACGCACA
3' Flanking SequenceTATATAGGAGATGCATAAGAAAACAGCGGTAGGTAGATATAAGTCAACAG
SpeciesGossypium barbadense
Germplasm3-79
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_I: no additional polymorphism was found to exist in the same contig
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:63749357..63749457 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:58586407..58586507 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:56803479..56803579 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold3533.1supercontigscaffold3533.1:61943..62043 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4165_D06supercontigscaffold4165_D06:180441..180541 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:62382541..62382641 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:61248618..61248718 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:61647442..61647542 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:58845701..58845801 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:58718343..58718443 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:58710561..58710661 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017706.1chromosomeCM017706.1:59238012..59238113 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:62256566..62256666 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:56436120..56436220 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:58870910..58871011 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>TAMU_Gb379_000030 ID=TAMU_Gb379_000030; Name=TAMU_Gb379_000030; organism=Gossypium barbadense; type=genetic_marker; length=105bp
TATTTATTTATTTATTATTACACTAGAATTTCACACATAGCAAACGCACA
[A/C]TATATAGGAGATGCATAAGAAAACAGCGGTAGGTAGATATAAGTC
AACAG