UCgsp10042_573, UCgsp10042_573 (genetic_marker) gossypium spp

Marker Overview
NameUCD_gsp10042_573
AliasUCgsp10042_573
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
5' Flanking SequenceTTAATTTTCTTCTAAAATAAGAGACCTTAT
3' Flanking SequenceTAAGAAAATATTCTTCACAAGAAGCAAATT
SpeciesGossypium spp.
Source TypeCotton genome-specific amplicons
Primer 1GSP10042_F: ATCACTAGATTTTCCTCTACCA
Primer 2GSP10042_R: CACCAGAATAACCAGCTGAGT
Primer 3GSP10042_F: ATCACTAGATTTTCCTCTACCA
Primer 4GSP10042_R: CACCAGAATAACCAGCTGAGT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:56186408..56186468 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:104024663..104024723 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:55262578..55262638 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:119447316..119447376 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:57009298..57009358 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:154736379..154736439 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:24251942..24252002 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold626.1supercontigscaffold626.1:441533..441593 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:56301659..56301719 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:76211468..76211528 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:59397708..59397768 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:103995117..103995177 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:60335599..60335659 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:106198077..106198137 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:59575982..59576042 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:104457589..104457649 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:56224381..56224441 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:102935921..102935981 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:55985995..55986055 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:104913592..104913652 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:57111837..57111897 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:108428153..108428213 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:56970568..56970628 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:106035732..106035792 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:60237352..60237412 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:111144838..111144898 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:56799140..56799200 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:106128287..106128347 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:60688439..60688499 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:107187326..107187386 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:113214663..113214723 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:117793398..117793458 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:55242696..55242756 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:6028170..6028230 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:56403021..56403081 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:41823260..41823320 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:40393096..40393156 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:59252347..59252407 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:39183440..39183500 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:30451982..30452041 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:38226151..38226211 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:109809751..109809811 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:91581039..91581099 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:3662422..3662482 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeUCD_gsp10042_573:1..61 .
Chr13:54815850..54815910 -		n/a
Sequence
>UCD_gsp10042_573 ID=UCD_gsp10042_573; Name=UCD_gsp10042_573; organism=Gossypium spp.; type=genetic_marker; length=65bp
TTAATTTTCTTCTAAAATAAGAGACCTTAT[G/T]TAAGAAAATATTCTT
CACAAGAAGCAAATT