UCgsp10037_218, UCgsp10037_218 (genetic_marker) gossypium spp

Marker Overview
NameUCD_gsp10037_218
AliasUCgsp10037_218
UCcgs10037_218
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceCACTATGAAAGTTATCTTTATGGTTCTCAT
3' Flanking SequenceACCATCTACGAGGATTTTAACTGTTAAATA
SpeciesGossypium spp.
Source TypeCotton genome-specific amplicons
Primer 1GSP10037_F: TGCAGAGGTTGAAAAGGCAA
Primer 2GSP10037_R: AACGGGAAGCTTCAAACAACAC
Primer 3GSP10037_F: TGCAGAGGTTGAAAAGGCAA
Primer 4GSP10037_R: AACGGGAAGCTTCAAACAACAC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018212.1chromosomeCM018212.1:8109859..8109919 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:116181000..116181060 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr9chromosomeAt_chr9:22313824..22313884 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A11chromosomeA11:7749920..7749980 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A11chromosomeGhir_A11:8326759..8326819 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A11chromosomeA11:7960140..7960200 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A11chromosomeA11:8194830..8194890 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A11chromosomeA11:8369175..8369235 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A11chromosomeGbar_A11:7945949..7946009 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A11chromosomeA11:8140731..8140791 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017620.1chromosomeCM017620.1:8304507..8304567 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017646.1chromosomeCM017646.1:8385632..8385692 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017698.1chromosomeCM017698.1:8283286..8283346 -Gossypium darwinii (AD5) genome HGS_v1.1
A11chromosomeA11:8494418..8494478 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr11chromosomeChr11:8502282..8502342 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr11chromosomeChr11:8135153..8135213 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_11chromosomeB_11:8079983..8080043 -Gossypium anomalum (B1) genome NSF_v1
E11chromosomeE11:9118948..9119008 -Gossypium stocksii (E1) genome NSF_v1
F11chromosomeF11:7182143..7182203 -Gossypium longicalyx (F1) genome NSF_v1
Sequence
>UCD_gsp10037_218 ID=UCD_gsp10037_218; Name=UCD_gsp10037_218; organism=Gossypium spp.; type=genetic_marker; length=65bp
CACTATGAAAGTTATCTTTATGGTTCTCAT[C/G]ACCATCTACGAGGAT
TTTAACTGTTAAATA