UCgsp10034_277, UCgsp10034_277 (genetic_marker) gossypium spp

Marker Overview
NameUCD_gsp10034_277
AliasUCgsp10034_277
UCcgs10034_277
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceCGGTAAAGATAATTACTCATTTAGCTTCAA
3' Flanking SequenceACAGGGTTTGTCACAGACAACAGTTATAAC
SpeciesGossypium spp.
Source TypeCotton genome-specific amplicons
Primer 1GSP10034_F: CTATGAAGCAAATGAAGTTGG
Primer 2GSP10034_R: CCACACGAATTTCATTGCCATTGC
Primer 3GSP10034_F: CTATGAAGCAAATGAAGTTGG
Primer 4GSP10034_R: CCACACGAATTTCATTGCCATTGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:99513702..99513762 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:470980..471040 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:23334727..23334787 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:83032360..83032420 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:107678288..107678348 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:107875546..107875606 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:105335664..105335724 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:103916786..103916846 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:99807378..99807438 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:101744752..101744812 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:104721692..104721752 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:109513531..109513591 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:101896260..101896320 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:107822881..107822941 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:92530713..92530773 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:102132519..102132579 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>UCD_gsp10034_277 ID=UCD_gsp10034_277; Name=UCD_gsp10034_277; organism=Gossypium spp.; type=genetic_marker; length=65bp
CGGTAAAGATAATTACTCATTTAGCTTCAA[C/G]ACAGGGTTTGTCACA
GACAACAGTTATAAC