UCcot10248_125, UCcot10248_125 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cot10248_125
AliasUCcot10248_125
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceATACGAGGTTAATAGACAGAATATATATAT
3' Flanking SequenceGCTTTATAACACAAACTATTTGCATATACA
SpeciesGossypium spp.
Source Typeconserved orthologous set
Primer 1cot10248_F: TACCATCTCCTCCGTTTCCA
Primer 2cot10248_R: GCCAAGGTTTATTGCTCCAT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:14590924..14590984 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:16347682..16347742 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:36191924..36191984 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:14856005..14856065 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:14719404..14719464 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:14270271..14270331 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:14965537..14965597 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:14668983..14669043 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:14618710..14618770 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:14752044..14752104 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:15170628..15170688 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:14871136..14871196 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:15120702..15120762 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:116024497..116024557 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:114634322..114634382 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>UCD_cot10248_125 ID=UCD_cot10248_125; Name=UCD_cot10248_125; organism=Gossypium spp.; type=genetic_marker; length=65bp
ATACGAGGTTAATAGACAGAATATATATAT[A/T]GCTTTATAACACAAA
CTATTTGCATATACA