UCcg11015_757, UCcg11015_757 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg11015_757
AliasUCcg11015_757
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTGAGGTTGAGAATTATAATGGGCATGGCTT
3' Flanking SequenceCTGCCTCGAGCACATGCACCAGCTAAACCC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg11015_F: ATGCTCCAAATGGCACTCTC
Primer 2cg11015_R: ATTCCGTCTCCTTCCCTGTC
Primer 3cg11015_F: ATGCTCCAAATGGCACTCTC
Primer 4cg11015_R: ATTCCGTCTCCTTCCCTGTC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018218.1chromosomeCM018218.1:12998075..12998135 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018206.1chromosomeCM018206.1:72194197..72194257 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_04chromosomeD5_04:38056498..38056558 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_06chromosomeKI_06:59730930..59730990 +Gossypioides kirkii genome ISU_v3
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:80747277..80747337 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_04chromosomeD10_04:13015072..13015132 -Gossypium turneri (D10) genome NSF_v1_a2
CM016617.1chromosomeCM016617.1:23290602..23290662 -Gossypium australe (G2) genome CRI_v1.1
At_chr9chromosomeAt_chr9:25427610..25427670 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr7chromosomeAt_chr7:13759307..13759367 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold193936supercontigscaffold193936:195..255 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D04chromosomeD04:13044080..13044140 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A05chromosomeA05:68693491..68693551 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D04chromosomeGhir_D04:13637280..13637340 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A05chromosomeGhir_A05:77928783..77928843 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D04chromosomeD04:13285092..13285152 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A05chromosomeA05:80296928..80296988 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D04chromosomeD04:13539877..13539937 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A05chromosomeA05:78909769..78909829 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D04chromosomeD04:12954073..12954133 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A05chromosomeA05:77912290..77912350 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D04chromosomeGbar_D04:13113897..13113957 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A05chromosomeGbar_A05:73022369..73022429 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D04chromosomeD04:13029332..13029392 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A05chromosomeA05:75968715..75968775 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017626.1chromosomeCM017626.1:13173503..13173563 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017614.1chromosomeCM017614.1:75706963..75707023 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017652.1chromosomeCM017652.1:13502219..13502279 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017640.1chromosomeCM017640.1:79666647..79666707 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017704.1chromosomeCM017704.1:13069935..13069995 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017692.1chromosomeCM017692.1:74667770..74667830 -Gossypium darwinii (AD5) genome HGS_v1.1
D04chromosomeD04:14010526..14010586 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A05chromosomeA05:80189978..80190038 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr04chromosomeChr04:18481020..18481080 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr04chromosomeChr04:18534633..18534693 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr04chromosomeChr04:37826564..37826624 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_02chromosomeB_02:67373640..67373700 +Gossypium anomalum (B1) genome NSF_v1
Chr12chromosomeChr12:13337492..13337552 -Gossypium thurberi (D1-5) genome CRI_v1
chr12chromosomechr12:11951127..11951187 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_12chromosomeChr_12:8948999..8949059 -Gossypium harknessii (D2-2) genome ISU_v1
Chr12chromosomeChr12:13184242..13184302 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr12chromosomeChr12:11429364..11429424 -Gossypium aridum (D4) genome ISU_v1
Chr12_3472291chromosomeChr12_3472291:5192..5252 +Gossypium gossypioides (D6) genome ISU_v1
Chr12chromosomeChr12:10618607..10618667 -Gossypium lobatum (D7) genome ISU_v1
E04chromosomeE04:22403809..22403868 -Gossypium stocksii (E1) genome NSF_v1
F04chromosomeF04:16190733..16190793 -Gossypium longicalyx (F1) genome NSF_v1
Chr04chromosomeChr04:58890428..58890488 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr12chromosomeUCD_cg11015_757:1..61 .
Chr12:12694750..12694810 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A125.11UCcg11015_757View
Sequence
>UCD_cg11015_757 ID=UCD_cg11015_757; Name=UCD_cg11015_757; organism=Gossypium spp.; type=genetic_marker; length=65bp
TGAGGTTGAGAATTATAATGGGCATGGCTT[A/T]CTGCCTCGAGCACAT
GCACCAGCTAAACCC