UCcg10647_453, UCcg10647_453 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10647_453
AliasUCcg10647_453
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAAATAATGGCAATACCATATAGACAACAAG
3' Flanking SequenceTTATTTATTTTAGGCCACTAAAAGAGGATC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10647_F: AACACAACCATCTACCCAGTCA
Primer 2cg10647_R: TGCCAGCAAGAACTTTGAGA
Primer 3cg10647_F: AACACAACCATCTACCCAGTCA
Primer 4cg10647_R: TGCCAGCAAGAACTTTGAGA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:99737203..99737263 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:108376517..108376577 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:31452000..31452059 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2110.1supercontigscaffold2110.1:214159..214219 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:85256595..85256655 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:103483944..103484004 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:106647934..106647994 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:106299422..106299482 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:102352152..102352212 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:100334974..100335034 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:101608631..101608691 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:99869023..99869083 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:109411296..109411356 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:100600239..100600299 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:108119474..108119534 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:111688877..111688937 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:112429994..112430054 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:84402982..84403041 -Gossypium anomalum (B1) genome NSF_v1n/a
E08chromosomeE08:100046394..100046452 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr08chromosomeChr08:38453248..38453307 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10647_453 ID=UCD_cg10647_453; Name=UCD_cg10647_453; organism=Gossypium spp.; type=genetic_marker; length=65bp
AAATAATGGCAATACCATATAGACAACAAG[C/T]TTATTTATTTTAGGC
CACTAAAAGAGGATC