UCcg10646_485, UCcg10646_485 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10646_485
AliasUCcg10646_485
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceCCTTTTCTTGAAACTGCTTGTCCGGGTAAA
3' Flanking SequenceATCACGGGATGCATTCAAAACTCGTATCTG
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10646_F: CCTTACCTGGAATTGCCTGA
Primer 2cg10646_R: CGCATTATCAACAAGCATGG
Primer 3cg10646_F: CCTTACCTGGAATTGCCTGA
Primer 4cg10646_R: CGCATTATCAACAAGCATGG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018207.1chromosomeCM018207.1:114958463..114958523 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:130499156..130499216 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold4842supercontigscaffold4842:46980..47040 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:122849436..122849496 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold67-1_subseq_3489944_3606482_obj_A06supercontigscaffold67-1_subseq_3489944_3606482_obj_A06:107621..107681 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:124928203..124928263 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:120721441..120721501 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:113971916..113971976 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:117029550..117029610 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:120403233..120403293 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:125639968..125640028 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:118255341..118255401 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:127007960..127008020 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:129802667..129802727 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>UCD_cg10646_485 ID=UCD_cg10646_485; Name=UCD_cg10646_485; organism=Gossypium spp.; type=genetic_marker; length=65bp
CCTTTTCTTGAAACTGCTTGTCCGGGTAAA[A/C]ATCACGGGATGCATT
CAAAACTCGTATCTG