UCcg10640_484, UCcg10640_484 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10640_484
AliasUCcg10640_484
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTTTTTGTTTATCAGACAAGAGCTGCTCGCT
3' Flanking SequenceCTTTATTGTATTTTCATGGTATTACTTATG
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10640_F: GCCAACTCCTCCAACACATT
Primer 2cg10640_R: GAACTGGCCGAGCAATCTAC
Primer 3cg10640_F: GCCAACTCCTCCAACACATT
Primer 4cg10640_R: GAACTGGCCGAGCAATCTAC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:5885893..5885953 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:47021664..47021724 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_2_4chromosomeKI_2_4:37118636..37118696 -Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:106874091..106874151 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:45237703..45237763 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:105254349..105254409 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr3chromosomeDt_chr3:21948043..21948103 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold514_A03supercontigscaffold514_A03:7482..7542 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:40853121..40853181 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:6683795..6683855 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:46525383..46525443 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:6274441..6274501 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:48008920..48008980 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:6633917..6633977 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:47522889..47522949 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:6049080..6049140 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:46827625..46827685 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:5760468..5760528 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:45430379..45430439 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:6016500..6016560 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:47903456..47903516 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:6249601..6249661 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:6657922..6657982 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:50375085..50375145 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:6197473..6197533 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:47882539..47882599 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:6728030..6728090 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:48785132..48785192 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:5711192..5711252 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:112404389..112404449 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_04chromosomeB_04:6528782..6528842 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:44419343..44419403 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:29696346..29696406 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:25215815..25215875 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:46336113..46336173 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:25652433..25652493 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:22045251..22045311 -Gossypium gossypioides (D6) genome ISU_v1n/a
E02chromosomeE02:80487094..80487154 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr02chromosomeChr02:9002909..9002968 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomeChr02:9010680..9010740 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10640_484 ID=UCD_cg10640_484; Name=UCD_cg10640_484; organism=Gossypium spp.; type=genetic_marker; length=65bp
TTTTTGTTTATCAGACAAGAGCTGCTCGCT[A/T]CTTTATTGTATTTTC
ATGGTATTACTTATG