UCcg10614_296, UCcg10614_296 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10614_296
AliasUCcg10614_296
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceGATGTGTTAGGCGGTGGCGAACGGCGCCGC
3' Flanking SequenceAGCTTCGCCACCTCTATTTTGAAACCTTGC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10614_F: CGACTGGCCTCGAAATTAAG
Primer 2cg10614_R: TGCCAGCAGTGTCTTTGACT
Primer 3cg10614_F: CGACTGGCCTCGAAATTAAG
Primer 4cg10614_R: TGCCAGCAGTGTCTTTGACT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:8650884..8650944 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:9782692..9782752 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:39474270..39474330 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:8937647..8937707 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:8899243..8899303 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:8583372..8583432 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:9162673..9162733 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:9141598..9141658 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:8757012..8757072 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:8675205..8675265 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:8742824..8742884 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:9110824..9110884 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:8821606..8821666 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:9230114..9230174 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:122176261..122176321 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:121003175..121003235 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F03chromosomeF03:8920154..8920214 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>UCD_cg10614_296 ID=UCD_cg10614_296; Name=UCD_cg10614_296; organism=Gossypium spp.; type=genetic_marker; length=65bp
GATGTGTTAGGCGGTGGCGAACGGCGCCGC[C/T]AGCTTCGCCACCTCT
ATTTTGAAACCTTGC