UCcg10600_166, UCcg10600_166 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10600_166
AliasUCcg10600_166
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGAATATGAAAAGGTGCTTTCGAGAAATTCA
3' Flanking SequenceTTTCAGCATATTCATATATCAGAAAACTCA
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10600_F: TGTGACCATCTTCCATCCAA
Primer 2cg10600_R: GCATCTCAATGGGCATACAA
Primer 3cg10600_F: TGTGACCATCTTCCATCCAA
Primer 4cg10600_R: GCATCTCAATGGGCATACAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:21070368..21070428 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:19942345..19942405 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr1chromosomeDt_chr1:31066700..31066760 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:20242311..20242371 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:21376866..21376926 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:20455903..20455963 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:21440985..21441045 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:21125313..21125373 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:21019426..21019486 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:21055011..21055071 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:20960965..20961025 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:21038699..21038759 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:21349365..21349425 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:21583854..21583914 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:22474682..22474742 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>UCD_cg10600_166 ID=UCD_cg10600_166; Name=UCD_cg10600_166; organism=Gossypium spp.; type=genetic_marker; length=65bp
GAATATGAAAAGGTGCTTTCGAGAAATTCA[C/T]TTTCAGCATATTCAT
ATATCAGAAAACTCA