UCcg10550_164, UCcg10550_164 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10550_164
AliasUCcg10550_164
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceTCCCCCTAACCCCACGTGACGTCAAACATC
3' Flanking SequenceCTATATTATCATCCTTTGCCACCTCACCAT
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10550_F: TTGGAAATAGCCACGGAGAG
Primer 2cg10550_R: TAAGGATGATAGGCCGGATG
Primer 3cg10550_F: TTGGAAATAGCCACGGAGAG
Primer 4cg10550_R: TAAGGATGATAGGCCGGATG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:94566040..94566100 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:123358878..123358938 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:15044519..15044579 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:51412011..51412071 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:89196122..89196182 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:101171622..101171682 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:100234623..100234683 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:98249482..98249542 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:93495944..93496004 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:93758296..93758356 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:96059402..96059462 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:95375533..95375593 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:102299254..102299314 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:96365211..96365271 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:101786612..101786672 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:12099222..12099282 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:12277403..12277463 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:11521611..11521671 -Gossypium anomalum (B1) genome NSF_v1n/a
E03chromosomeE03:110648256..110648316 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:99549639..99549698 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:21167428..21167488 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10550_164 ID=UCD_cg10550_164; Name=UCD_cg10550_164; organism=Gossypium spp.; type=genetic_marker; length=65bp
TCCCCCTAACCCCACGTGACGTCAAACATC[C/T]CTATATTATCATCCT
TTGCCACCTCACCAT