UCcg10472_247, UCcg10472_247 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10472_247
AliasUCcg10472_247
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceATTTACTCCTCTAAACATCACATATTTGAC
3' Flanking SequenceACAAGCCTAATTTCTTAATATTTGTAGTCT
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10472_F: AATGCGGGCTTACACTCAAT
Primer 2cg10472_R: GGTGATGCTGAGCTTTGTGA
Primer 3cg10472_F: AATGCGGGCTTACACTCAAT
Primer 4cg10472_R: GGTGATGCTGAGCTTTGTGA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:34289899..34289958 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:51897502..51897562 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00005466_CRI-A2_v1.0.a1chromosometig00005466_CRI-A2_v1.0.a1:111871..111930 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:85669976..85670035 +Gossypium australe (G2) genome CRI_v1.1n/a
D04chromosomeD04:31257405..31257464 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:33518862..33518922 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:36160843..36160902 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:54695980..54696040 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:37316521..37316580 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:57438341..57438401 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:36274034..36274093 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:54952041..54952101 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:33918567..33918626 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:50652968..50653028 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:32473508..32473567 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:52285381..52285441 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:37660824..37660883 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:52845334..52845394 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:34939981..34940040 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:54490981..54491041 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:37484180..37484239 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:60604380..60604440 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:34798069..34798128 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:52406524..52406584 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:37746412..37746471 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:57989843..57989903 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:87344800..87344859 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:78666571..78666630 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:34563588..34563647 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:46593930..46593989 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12chromosomeChr12:34191520..34191579 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:36436760..36436819 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:44998831..44998890 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr04chromosomeChr04:77026626..77026685 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10472_247 ID=UCD_cg10472_247; Name=UCD_cg10472_247; organism=Gossypium spp.; type=genetic_marker; length=65bp
ATTTACTCCTCTAAACATCACATATTTGAC[C/T]ACAAGCCTAATTTCT
TAATATTTGTAGTCT