UCcg10468_728, UCcg10468_728 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10468_728
AliasUCcg10468_728
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTAAAAATGTCGACTCCCGTAAACTCAATCC
3' Flanking SequenceTTGCATGTAAACTGGATGTTGCTTTAACTG
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10468_F: GGTGGGACACTTGGAAGGTA
Primer 2cg10468_R: TGACCAACACAGGGTAATGC
Primer 3cg10468_F: GGTGGGACACTTGGAAGGTA
Primer 4cg10468_R: TGACCAACACAGGGTAATGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:853232..853292 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:747175..747233 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:56577383..56577443 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:102212918..102212976 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:701937..701997 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:125377403..125377463 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1701.1supercontigscaffold1701.1:213367..213427 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:43150350..43150408 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:778785..778845 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:693996..694054 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:837414..837474 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:842780..842838 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:828962..829022 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:853447..853505 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:830487..830547 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:855783..855841 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:833047..833105 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:841073..841133 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:719919..719977 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:808113..808173 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:810514..810572 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:740953..741011 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:805400..805460 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:876128..876186 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:824430..824490 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:762456..762514 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:850630..850690 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:851220..851278 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:724463..724521 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:849297..849357 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:818004..818064 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:779699..779759 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:707841..707901 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:768145..768205 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:583679..583739 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:740765..740825 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:876431..876491 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr12chromosomeChr12:794652..794712 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeUCD_cg10468_728:1..61 .
Chr08:830207..830267 +		n/a
Sequence
>UCD_cg10468_728 ID=UCD_cg10468_728; Name=UCD_cg10468_728; organism=Gossypium spp.; type=genetic_marker; length=65bp
TAAAAATGTCGACTCCCGTAAACTCAATCC[A/G]TTGCATGTAAACTGG
ATGTTGCTTTAACTG