UCcg10468_506, UCcg10468_506 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10468_506
AliasUCcg10468_506
dbSNP IDN/A
TypeSNP
SNP AllelesT/G
5' Flanking SequenceGTATTGTTAATTTGACTAAGATCGAGCAAA
3' Flanking SequenceGGAGAATAAAAGACCTCACCTGTATTCGGG
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10468_F: GGTGGGACACTTGGAAGGTA
Primer 2cg10468_R: TGACCAACACAGGGTAATGC
Primer 3cg10468_F: GGTGGGACACTTGGAAGGTA
Primer 4cg10468_R: TGACCAACACAGGGTAATGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:853010..853070 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:56577605..56577665 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold1701.1supercontigscaffold1701.1:213145..213205 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:778563..778623 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:837192..837252 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:828740..828800 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:830265..830325 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:840851..840911 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:807891..807951 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017660.1chromosomeCM017660.1:805178..805238 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:824208..824268 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:850408..850468 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:849075..849135 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:817782..817842 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:779477..779537 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:707619..707679 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:767923..767983 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:583457..583517 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:740543..740603 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>UCD_cg10468_506 ID=UCD_cg10468_506; Name=UCD_cg10468_506; organism=Gossypium spp.; type=genetic_marker; length=65bp
GTATTGTTAATTTGACTAAGATCGAGCAAA[G/T]GGAGAATAAAAGACC
TCACCTGTATTCGGG