UCcg10468_406, UCcg10468_406 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10468_406
AliasUCcg10468_406
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceAAATGTACTTTTGGCCCGTGCTGCGATAAA
3' Flanking SequenceCATTTCGAGAAATTGATGAAATGTTAATCA
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10468_F: GGTGGGACACTTGGAAGGTA
Primer 2cg10468_R: TGACCAACACAGGGTAATGC
Primer 3cg10468_F: GGTGGGACACTTGGAAGGTA
Primer 4cg10468_R: TGACCAACACAGGGTAATGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:852910..852970 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:746853..746913 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:56577705..56577765 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:37934106..37934166 +Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:102213238..102213298 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:701615..701675 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:125377725..125377785 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1701.1supercontigscaffold1701.1:213045..213105 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:43150670..43150730 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:778463..778523 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:693674..693734 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:837092..837152 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:842458..842518 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:828640..828700 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:853125..853185 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:830165..830225 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:855461..855521 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:832725..832785 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:840751..840811 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:719597..719657 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:807791..807851 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:810192..810252 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:740631..740691 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:805078..805138 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:875806..875866 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:824108..824168 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:762134..762194 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:850308..850368 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:850898..850958 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:788112..788172 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:724141..724201 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:848975..849035 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:890331..890391 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:817682..817742 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:779377..779437 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:707519..707579 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:767823..767883 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:692804..692864 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:583357..583417 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:740443..740503 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:876109..876169 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:540586..540646 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:794332..794392 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeUCD_cg10468_406:1..61 .
Chr08:829885..829945 +		n/a
Sequence
>UCD_cg10468_406 ID=UCD_cg10468_406; Name=UCD_cg10468_406; organism=Gossypium spp.; type=genetic_marker; length=65bp
AAATGTACTTTTGGCCCGTGCTGCGATAAA[A/T]CATTTCGAGAAATTG
ATGAAATGTTAATCA