UCcg10468_224, UCcg10468_224 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10468_224
AliasUCcg10468_224
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceTAATATATGAAACCGATAACAAATTGAATC
3' Flanking SequenceAACAAAGAGCATTGTAGTCTTAATATCTAC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10468_F: GGTGGGACACTTGGAAGGTA
Primer 2cg10468_R: TGACCAACACAGGGTAATGC
Primer 3cg10468_F: GGTGGGACACTTGGAAGGTA
Primer 4cg10468_R: TGACCAACACAGGGTAATGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018226.1chromosomeCM018226.1:852728..852788 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_12chromosomeD5_12:56577887..56577947 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
CM016625.1chromosomeCM016625.1:125377907..125377967 -Gossypium australe (G2) genome CRI_v1.1
scaffold1701.1supercontigscaffold1701.1:212863..212923 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D12chromosomeD12:778281..778341 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D12chromosomeGhir_D12:836910..836970 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D12chromosomeD12:828458..828518 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D12chromosomeD12:829983..830043 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
Gbar_D12chromosomeGbar_D12:840569..840629 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D12chromosomeD12:807609..807669 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017660.1chromosomeCM017660.1:804896..804956 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017712.1chromosomeCM017712.1:823926..823986 +Gossypium darwinii (AD5) genome HGS_v1.1
D12chromosomeD12:850126..850186 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr12chromosomeChr12:848793..848853 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_12chromosomeB_12:890149..890209 +Gossypium anomalum (B1) genome NSF_v1
Chr08chromosomeChr08:817500..817560 +Gossypium thurberi (D1-5) genome CRI_v1
chr08chromosomechr08:779195..779255 +Gossypium armourianum (D2-1) genome ISU_v1
Chr08chromosomeChr08:767641..767701 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr08chromosomeChr08:692622..692682 +Gossypium aridum (D4) genome ISU_v1
Chr08chromosomeChr08:583175..583235 +Gossypium gossypioides (D6) genome ISU_v1
Chr08chromosomeChr08:740261..740321 +Gossypium lobatum (D7) genome ISU_v1
E12chromosomeE12:875927..875986 +Gossypium stocksii (E1) genome NSF_v1
Chr12chromosomeChr12:794150..794210 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr08chromosomeUCD_cg10468_224:1..61 .
Chr08:829703..829763 +
Sequence
>UCD_cg10468_224 ID=UCD_cg10468_224; Name=UCD_cg10468_224; organism=Gossypium spp.; type=genetic_marker; length=65bp
TAATATATGAAACCGATAACAAATTGAATC[C/G]AACAAAGAGCATTGT
AGTCTTAATATCTAC