UCcg10441_245, UCcg10441_245 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10441_245
AliasUCcg10441_245
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAACCAGGTCTGGTTGCAACTTCAATCCTTT
3' Flanking SequenceTTCGATGTAAAAGGCATCTAATATCTCTTT
SpeciesGossypium spp.
Source Typeintron
Primer 1cg10441_F: CACCAATCAATGTGCTTCCA
Primer 2cg10441_R: ATGTTGCGAGTGTCGTATGC
Primer 3cg10441_F: CACCAATCAATGTGCTTCCA
Primer 4cg10441_R: ATGTTGCGAGTGTCGTATGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:294106..294166 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:365929..365989 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:65377111..65377171 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:124175617..124175677 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:374113..374173 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:435689..435749 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:42183112..42183172 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:308094..308154 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:368669..368729 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:351050..351110 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:339171..339231 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:347020..347080 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:300070..300130 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:340339..340399 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:207787..207847 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:340251..340311 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:344724..344784 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:266811..266871 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:308561..308621 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:355733..355793 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:299941..300001 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:364788..364848 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:333515..333575 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:351416..351476 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:326730..326790 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:328720..328780 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:306386..306446 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:343642..343702 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:383354..383414 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:345168..345228 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:62864556..62864616 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:402036..402096 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:349659..349719 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:251658..251718 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:258533..258593 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:395236..395297 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:243649..243709 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:212062..212122 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:259034..259094 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:327365..327425 +Gossypium stocksii (E1) genome NSF_v1n/a
E11chromosomeE11:317752..317812 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:271803..271863 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:186560316..186560376 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr07chromosomeUCD_cg10441_245:1..61 .
Chr07:352061..352121 +		n/a
Sequence
>UCD_cg10441_245 ID=UCD_cg10441_245; Name=UCD_cg10441_245; organism=Gossypium spp.; type=genetic_marker; length=65bp
AACCAGGTCTGGTTGCAACTTCAATCCTTT[A/G]TTCGATGTAAAAGGC
ATCTAATATCTCTTT