UCcg10436_861, UCcg10436_861 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10436_861
AliasUCcg10436_861
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTTCAATTGGTTTGACTGGTTCAATCGATCT
3' Flanking SequenceAATAAAAAATTATTAAAAGTTCAAAAATAA
SpeciesGossypium spp.
Source Typeintron
Primer 1cg10436_F: CCAATCTTCTGCACATCGAA
Primer 2cg10436_R: GCATCAGTCTTTGGAGACAGC
Primer 3cg10436_F: CCAATCTTCTGCACATCGAA
Primer 4cg10436_R: GCATCAGTCTTTGGAGACAGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018208.1chromosomeCM018208.1:11039319..11039379 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:12117099..12117159 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
scaffold1609.1supercontigscaffold1609.1:116448..116508 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A07chromosomeA07:10046941..10047001 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A07chromosomeGhir_A07:11003290..11003350 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A07chromosomeA07:10443686..10443746 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A07chromosomeA07:10969101..10969161 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
Gbar_A07chromosomeGbar_A07:11047944..11048004 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A07chromosomeA07:10815463..10815523 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017616.1chromosomeCM017616.1:10861054..10861114 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017642.1chromosomeCM017642.1:11048342..11048402 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017694.1chromosomeCM017694.1:10947473..10947533 -Gossypium darwinii (AD5) genome HGS_v1.1
A07chromosomeA07:11089804..11089864 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr07chromosomeChr07:11369388..11369448 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr07chromosomeChr07:11404778..11404838 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr01chromosomeChr01:6415491..6415551 -Gossypium gossypioides (D6) genome ISU_v1
F07chromosomeF07:10309665..10309725 -Gossypium longicalyx (F1) genome NSF_v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch07_At.07N/A50.86UCcg10436_861View
Sequence
>UCD_cg10436_861 ID=UCD_cg10436_861; Name=UCD_cg10436_861; organism=Gossypium spp.; type=genetic_marker; length=65bp
TTCAATTGGTTTGACTGGTTCAATCGATCT[A/G]AATAAAAAATTATTA
AAAGTTCAAAAATAA