UCcg10317_103, UCcg10317_103 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10317_103
AliasUCcg10317_103
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTTAATCTCTCTAATCTTCTTGTTTTCAAT
3' Flanking SequenceCCCAAATCACTCTCAGCCCTTGATCCTGAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10317_F: TCCTATCAATGGCGGCTAAC
Primer 2cg10317_R: ACGGTCTGGAACTGGTCAAC
Primer 3cg10317_F: TCCTATCAATGGCGGCTAAC
Primer 4cg10317_R: ACGGTCTGGAACTGGTCAAC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:448533..448593 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_13chromosomeKI_13:85827..85887 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:840540..840600 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016618.1chromosomeCM016618.1:96881477..96881537 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2916.1supercontigscaffold2916.1:161296..161356 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:358584..358644 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:288169..288229 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:526699..526759 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:548481..548541 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:372151..372211 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:478366..478426 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:472388..472448 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:472484..472544 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:436895..436955 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:267391..267451 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:519771..519831 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:425471..425531 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:455987..456047 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
E13chromosomeE13:558745..558805 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:443780..443840 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:114855036..114855096 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10317_103 ID=UCD_cg10317_103; Name=UCD_cg10317_103; organism=Gossypium spp.; type=genetic_marker; length=65bp
TTTAATCTCTCTAATCTTCTTGTTTTCAAT[C/T]CCCAAATCACTCTCA
GCCCTTGATCCTGAA