UCcg10308_236, UCcg10308_236 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10308_236
AliasUCcg10308_236
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTATCGAATTCTCTTTTACTTCCATGCTTTC
3' Flanking SequenceTTTCGGGTTTCATCCTTGACAAACTAGATG
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10308_F: TTTCCGACTAAACTTGCGCT
Primer 2cg10308_R: CCTTTGCAGCTTCCTCTTTG
Primer 3cg10308_F: TTTCCGACTAAACTTGCGCT
Primer 4cg10308_R: CCTTTGCAGCTTCCTCTTTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:18176153..18176213 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:50613120..50613180 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:104769723..104769783 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:24508314..24508374 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr7chromosomeAt_chr7:459006..459066 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:13286360..13286420 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2753_A11supercontigscaffold2753_A11:43788..43848 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:18951776..18951836 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:15612576..15612636 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:18345878..18345938 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:16009992..16010052 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:18670349..18670409 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:15793377..15793437 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:19092869..19092929 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:17967852..17967912 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:15614418..15614478 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:18168662..18168722 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:15533119..15533179 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:18617818..18617878 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:18765507..18765567 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:18449115..18449175 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:19246837..19246897 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:19501640..19501700 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:48533885..48533945 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:17853143..17853203 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:15626520..15626580 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:15478931..15478991 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E11chromosomeE11:20176752..20176812 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr11chromosomeChr11:156546940..156547000 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10308_236 ID=UCD_cg10308_236; Name=UCD_cg10308_236; organism=Gossypium spp.; type=genetic_marker; length=65bp
TATCGAATTCTCTTTTACTTCCATGCTTTC[C/T]TTTCGGGTTTCATCC
TTGACAAACTAGATG