UCcg10301_954, UCcg10301_954 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10301_954
AliasUCcg10301_954
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTATTCAATGTTTTTAGTTACTTGCATCACT
3' Flanking SequenceAAGAGTCACAAAATAAGAACATCATAAATT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 2cg10301_R: TATACCAAACCCGAACCCAA
Primer 3cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 4cg10301_R: TATACCAAACCCGAACCCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:61219790..61219850 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:106254718..106254778 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:3532340..3532400 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4252448..4252508 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:3545747..3545807 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:139953369..139953429 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1048.1supercontigscaffold1048.1:112124..112184 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:60125984..60126044 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:97220011..97220071 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:63891701..63891761 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:111063985..111064045 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:63249906..63249966 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111534587..111534647 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:62391850..62391910 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:111172893..111172953 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:60348918..60348978 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:61387464..61387524 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:106532168..106532228 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:62381351..62381411 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:107917321..107917381 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:61334832..61334892 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:107209436..107209496 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:64029317..64029377 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:114904773..114904833 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:62711138..62711198 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:109493475..109493535 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:64062379..64062439 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:114348647..114348707 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124077191..124077251 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120007452..120007512 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:58620317..58620377 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:4718075..4718135 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:60768605..60768665 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:49689658..49689718 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:41044423..41044483 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:62221075..62221135 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:46000530..46000590 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:33763294..33763354 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:44726389..44726449 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:5175265..5175325 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:91349557..91349617 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeUCD_cg10301_954:1..61 .
Chr11:59148194..59148254 -		n/a
Sequence
>UCD_cg10301_954 ID=UCD_cg10301_954; Name=UCD_cg10301_954; organism=Gossypium spp.; type=genetic_marker; length=65bp
TATTCAATGTTTTTAGTTACTTGCATCACT[C/T]AAGAGTCACAAAATA
AGAACATCATAAATT