UCcg10301_777, UCcg10301_777 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10301_777
AliasUCcg10301_777
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceAGAGGGGAAGGCAGGGGCCTTGGTCCCCCT
3' Flanking SequenceGGTTAAATGGTCTAATTGTATTTCTATCCC
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 2cg10301_R: TATACCAAACCCGAACCCAA
Primer 3cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 4cg10301_R: TATACCAAACCCGAACCCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:61219967..61220027 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:106254895..106254954 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:3532163..3532223 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4252272..4252331 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:3545570..3545630 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:139953546..139953606 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1048.1supercontigscaffold1048.1:112301..112361 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:60126161..60126221 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:97220188..97220247 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:63891878..63891938 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:111064162..111064221 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:63250083..63250143 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111534764..111534823 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:62392027..62392087 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:111173070..111173129 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:60349095..60349155 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:61387641..61387701 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:106532345..106532404 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:62381528..62381588 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:107917498..107917557 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:61335009..61335069 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:107209613..107209672 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:64029494..64029554 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:114904950..114905008 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:62711306..62711366 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:109493652..109493711 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:64062556..64062616 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:114348824..114348883 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124077368..124077427 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120007629..120007688 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:58620494..58620554 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:4717898..4717958 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:60768782..60768842 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:49689835..49689895 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr11chromosomechr11:49690270..49690330 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:41044599..41044659 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:62221251..62221311 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:46000866..46000926 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:46001269..46001329 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:33763471..33763531 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:44727000..44727060 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr11chromosomeChr11:44726726..44726786 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:5175088..5175148 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr11chromosomeUCD_cg10301_777:1..61 .
Chr11:59148371..59148431 -		n/a
Sequence
>UCD_cg10301_777 ID=UCD_cg10301_777; Name=UCD_cg10301_777; organism=Gossypium spp.; type=genetic_marker; length=65bp
AGAGGGGAAGGCAGGGGCCTTGGTCCCCCT[A/T]GGTTAAATGGTCTAA
TTGTATTTCTATCCC