UCcg10301_737, UCcg10301_737 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10301_737
AliasUCcg10301_737
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceCTCGGTGATATCAGTCAAGTATACCAAAGG
3' Flanking SequenceAACATCACTAGAGGGGAAGGCAGGGGCCTT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 2cg10301_R: TATACCAAACCCGAACCCAA
Primer 3cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 4cg10301_R: TATACCAAACCCGAACCCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:61220007..61220067 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:106254934..106254994 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:3532123..3532183 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4252232..4252292 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:3545530..3545590 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1048.1supercontigscaffold1048.1:112341..112401 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:60126201..60126261 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:97220227..97220287 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:63891918..63891978 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:111064201..111064261 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:63250123..63250183 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111534803..111534863 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:62392067..62392127 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:111173109..111173169 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:60349135..60349195 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:61387681..61387741 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:106532384..106532444 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:62381568..62381628 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:107917537..107917597 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:61335049..61335109 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:107209652..107209712 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:62711346..62711406 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:109493691..109493751 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:64062596..64062656 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:114348863..114348923 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124077407..124077467 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120007668..120007728 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:58620534..58620594 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:4717858..4717918 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:60768822..60768882 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:49690310..49690370 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:41044639..41044699 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:62221291..62221351 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:46000906..46000966 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:33763511..33763571 -Gossypium gossypioides (D6) genome ISU_v1n/a
F10chromosomeF10:91349774..91349834 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeUCD_cg10301_737:1..61 .
Chr11:59148411..59148471 -		n/a
Sequence
>UCD_cg10301_737 ID=UCD_cg10301_737; Name=UCD_cg10301_737; organism=Gossypium spp.; type=genetic_marker; length=65bp
CTCGGTGATATCAGTCAAGTATACCAAAGG[A/T]AACATCACTAGAGGG
GAAGGCAGGGGCCTT