UCcg10301_260, UCcg10301_260 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10301_260
AliasUCcg10301_260
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGTACTTGTATACAGGGAAGTAGTAGAAGAC
3' Flanking SequenceGGGTAGAGGATCAAAGGACCCAAGTATTCG
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 2cg10301_R: TATACCAAACCCGAACCCAA
Primer 3cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 4cg10301_R: TATACCAAACCCGAACCCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:61220484..61220544 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:106255411..106255471 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:3531646..3531706 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:2523146..2523206 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4251755..4251815 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:3545054..3545114 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:139954063..139954123 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1048.1supercontigscaffold1048.1:112818..112878 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:60126678..60126738 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:97220704..97220764 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:63892394..63892454 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:111064678..111064738 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:63250600..63250660 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111535280..111535340 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:62392544..62392604 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:111173586..111173646 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:60349612..60349672 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:61388158..61388218 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:106532861..106532921 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:62382045..62382105 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:107918014..107918074 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:61335526..61335586 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:107210129..107210189 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:64030011..64030071 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:114905465..114905525 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:62711823..62711883 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:109494168..109494228 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:64063073..64063133 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:114349340..114349400 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124077884..124077944 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120008145..120008205 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:58621011..58621071 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:4717408..4717468 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:60769299..60769359 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:49690787..49690847 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:41045116..41045176 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:62221767..62221827 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:46003675..46003735 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:46001970..46002030 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:33763988..33764048 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:44727676..44727736 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:5174572..5174632 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:91350252..91350311 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeUCD_cg10301_260:1..61 .
Chr11:59148888..59148948 -		n/a
Sequence
>UCD_cg10301_260 ID=UCD_cg10301_260; Name=UCD_cg10301_260; organism=Gossypium spp.; type=genetic_marker; length=65bp
GTACTTGTATACAGGGAAGTAGTAGAAGAC[A/G]GGGTAGAGGATCAAA
GGACCCAAGTATTCG