UCcg10301_1025, UCcg10301_1025 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10301_1025
AliasUCcg10301_1025
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceGCAATATAATATGAAAATAAAACACATAAG
3' Flanking SequenceAGCAATGAATCTCTAGCACAATCATGGAAC
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 2cg10301_R: TATACCAAACCCGAACCCAA
Primer 3cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 4cg10301_R: TATACCAAACCCGAACCCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:106254647..106254707 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_10chromosomeKI_10:2523918..2523978 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4252519..4252579 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A10chromosomeA10:97219940..97220000 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:111063914..111063974 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:111534516..111534576 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111172822..111172882 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:106532097..106532157 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:107917250..107917310 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:61334761..61334821 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:107209365..107209425 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:114904702..114904762 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:109493404..109493464 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:114348576..114348636 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124077120..124077180 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120007381..120007441 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:4718146..4718206 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:60768534..60768594 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_11chromosomeChr_11:41044352..41044412 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:62221004..62221064 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:46000300..46000360 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:45999895..45999956 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:44726318..44726378 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:5175336..5175396 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>UCD_cg10301_1025 ID=UCD_cg10301_1025; Name=UCD_cg10301_1025; organism=Gossypium spp.; type=genetic_marker; length=65bp
GCAATATAATATGAAAATAAAACACATAAG[A/G]AGCAATGAATCTCTA
GCACAATCATGGAAC