UCcg10301_1001, UCcg10301_1001 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10301_1001
AliasUCcg10301_1001
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGAACATCATAAATTCATTATCCATGCAATA
3' Flanking SequenceAATATGAAAATAAAACACATAAGGAGCAAT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 2cg10301_R: TATACCAAACCCGAACCCAA
Primer 3cg10301_F: TGCAGGAAGCAATTCACAAG
Primer 4cg10301_R: TATACCAAACCCGAACCCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:106254671..106254731 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:3532387..3532447 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4252495..4252555 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A10chromosomeA10:97219964..97220024 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:111063938..111063998 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:111534540..111534600 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:60348871..60348931 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:106532121..106532181 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:107917274..107917334 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:107209389..107209449 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:114904726..114904786 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:109493428..109493488 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:114348600..114348660 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124077144..124077204 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120007405..120007465 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:4718122..4718182 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:62221028..62221088 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:46000324..46000384 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:45999919..45999980 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:44726342..44726402 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:5175312..5175372 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:91349510..91349570 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>UCD_cg10301_1001 ID=UCD_cg10301_1001; Name=UCD_cg10301_1001; organism=Gossypium spp.; type=genetic_marker; length=65bp
GAACATCATAAATTCATTATCCATGCAATA[C/T]AATATGAAAATAAAA
CACATAAGGAGCAAT