UCcg10297_698, UCcg10297_698 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10297_698
AliasUCcg10297_698
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceACTTAAATTTCTCTTATTTTCTCACCTCTT
3' Flanking SequenceTCTTTCCGATTTGAAATGACTTGTTTCTAT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 2cg10297_R: AAGGTTCAAAATCGACGGTG
Primer 3cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 4cg10297_R: AAGGTTCAAAATCGACGGTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018209.1chromosomeCM018209.1:117150635..117150695 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:127435765..127435825 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Dt_chr5chromosomeDt_chr5:13270789..13270849 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold5681supercontigscaffold5681:4703..4763 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A08chromosomeGhir_A08:120679670..120679730 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A08chromosomeA08:123224448..123224508 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:123589106..123589166 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A08chromosomeA08:119262445..119262505 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A08chromosomeGbar_A08:117827299..117827359 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:118778226..118778286 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017617.1chromosomeCM017617.1:117351852..117351912 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017643.1chromosomeCM017643.1:127116895..127116955 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017695.1chromosomeCM017695.1:118072707..118072767 -Gossypium darwinii (AD5) genome HGS_v1.1
A08chromosomeA08:125508515..125508575 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:130046963..130047023 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr08chromosomeChr08:130857033..130857093 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Sequence
>UCD_cg10297_698 ID=UCD_cg10297_698; Name=UCD_cg10297_698; organism=Gossypium spp.; type=genetic_marker; length=65bp
ACTTAAATTTCTCTTATTTTCTCACCTCTT[A/G]TCTTTCCGATTTGAA
ATGACTTGTTTCTAT