UCcg10297_649, UCcg10297_649 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10297_649
AliasUCcg10297_649
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAACAAGAGAAAAAAATTTACCTTTTGGGGG
3' Flanking SequenceAAAAATAATTTTGAAGAAACTTAAATTTCT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 2cg10297_R: AAGGTTCAAAATCGACGGTG
Primer 3cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 4cg10297_R: AAGGTTCAAAATCGACGGTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018209.1chromosomeCM018209.1:117150684..117150744 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:127435814..127435873 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Dt_chr5chromosomeDt_chr5:13270838..13270898 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold5681supercontigscaffold5681:4654..4714 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A08chromosomeGhir_A08:120679719..120679779 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A08chromosomeA08:123224497..123224557 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:123589155..123589215 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A08chromosomeA08:119262494..119262554 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A08chromosomeGbar_A08:117827348..117827408 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:118778275..118778335 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017617.1chromosomeCM017617.1:117351901..117351961 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017643.1chromosomeCM017643.1:127116944..127117004 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017695.1chromosomeCM017695.1:118072756..118072816 -Gossypium darwinii (AD5) genome HGS_v1.1
A08chromosomeA08:125508564..125508624 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:130047012..130047071 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr08chromosomeChr08:130857082..130857141 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
F08chromosomeF08:102851973..102852032 -Gossypium longicalyx (F1) genome NSF_v1
Sequence
>UCD_cg10297_649 ID=UCD_cg10297_649; Name=UCD_cg10297_649; organism=Gossypium spp.; type=genetic_marker; length=65bp
AACAAGAGAAAAAAATTTACCTTTTGGGGG[A/G]AAAAATAATTTTGAA
GAAACTTAAATTTCT