UCcg10297_638, UCcg10297_638 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10297_638
AliasUCcg10297_638
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceTGAAGTTGGAAAACAAGAGAAAAAAATTTA
3' Flanking SequenceCTTTTGGGGGAAAAAATAATTTTGAAGAAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 2cg10297_R: AAGGTTCAAAATCGACGGTG
Primer 3cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 4cg10297_R: AAGGTTCAAAATCGACGGTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018209.1chromosomeCM018209.1:117150695..117150755 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:127435825..127435884 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Dt_chr5chromosomeDt_chr5:13270849..13270909 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold5681supercontigscaffold5681:4643..4703 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A08chromosomeGhir_A08:120679730..120679790 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A08chromosomeA08:123224508..123224568 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:123589166..123589226 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A08chromosomeA08:119262505..119262565 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A08chromosomeGbar_A08:117827359..117827419 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:118778286..118778346 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017617.1chromosomeCM017617.1:117351912..117351972 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017643.1chromosomeCM017643.1:127116955..127117015 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017695.1chromosomeCM017695.1:118072767..118072827 -Gossypium darwinii (AD5) genome HGS_v1.1
A08chromosomeA08:125508575..125508635 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:130047023..130047082 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr08chromosomeChr08:130857093..130857152 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_08chromosomeB_08:102511706..102511765 -Gossypium anomalum (B1) genome NSF_v1
Chr08chromosomeChr08:2335992..2336050 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Sequence
>UCD_cg10297_638 ID=UCD_cg10297_638; Name=UCD_cg10297_638; organism=Gossypium spp.; type=genetic_marker; length=65bp
TGAAGTTGGAAAACAAGAGAAAAAAATTTA[A/C]CTTTTGGGGGAAAAA
ATAATTTTGAAGAAA