UCcg10297_1495, UCcg10297_1495 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10297_1495
AliasUCcg10297_1495
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAATTTATAAAGCACTGAGAATGAAAAAAAA
3' Flanking SequenceGGACCTTGCCGGAGCGCTTGAGATGGGCGG
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 2cg10297_R: AAGGTTCAAAATCGACGGTG
Primer 3cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 4cg10297_R: AAGGTTCAAAATCGACGGTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:117149838..117149898 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:127434969..127435029 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr5chromosomeDt_chr5:13269992..13270052 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold5681supercontigscaffold5681:5500..5560 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:120678873..120678933 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:123223651..123223711 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:123588309..123588369 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:119261648..119261708 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:64056036..64056094 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:117826502..117826562 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:65793447..65793505 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:118777430..118777489 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:117351054..117351115 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:127116097..127116158 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:118071910..118071970 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:125507718..125507778 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:130046166..130046226 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:130856236..130856296 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeUCD_cg10297_1495:1..61 .
Chr04:60392449..60392507 -		n/a
Sequence
>UCD_cg10297_1495 ID=UCD_cg10297_1495; Name=UCD_cg10297_1495; organism=Gossypium spp.; type=genetic_marker; length=65bp
AATTTATAAAGCACTGAGAATGAAAAAAAA[A/G]GGACCTTGCCGGAGC
GCTTGAGATGGGCGG