UCcg10297_94, UCcg10297_94 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10297_94
AliasUCcg10297_94
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAAATGAAAATTGCTTAACAGCAAAAACAAG
3' Flanking SequenceAAATTTCGGGATTAAAAGTTACTCAGATGG
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 2cg10297_R: AAGGTTCAAAATCGACGGTG
Primer 3cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 4cg10297_R: AAGGTTCAAAATCGACGGTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018209.1chromosomeCM018209.1:117151235..117151295 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_08chromosomeD5_08:59913558..59913618 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:127436367..127436427 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_08chromosomeD10_08:1477336..1477396 +Gossypium turneri (D10) genome NSF_v1_a2
CM016621.1chromosomeCM016621.1:2416813..2416873 +Gossypium australe (G2) genome CRI_v1.1
scaffold246.1supercontigscaffold246.1:601542..601602 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
Dt_chr5chromosomeDt_chr5:13271389..13271449 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold5681supercontigscaffold5681:4103..4163 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D08chromosomeD08:64406210..64406270 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D08chromosomeGhir_D08:66887520..66887580 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A08chromosomeGhir_A08:120680270..120680330 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D08chromosomeD08:67158137..67158197 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:123225048..123225108 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D08chromosomeD08:66734432..66734492 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A08chromosomeA08:123589706..123589766 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D08chromosomeD08:64034291..64034351 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A08chromosomeA08:119263045..119263105 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A08chromosomeGbar_A08:117827899..117827959 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:118778826..118778886 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017630.1chromosomeCM017630.1:65609644..65609704 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017617.1chromosomeCM017617.1:117352452..117352512 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017656.1chromosomeCM017656.1:67752478..67752538 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017643.1chromosomeCM017643.1:127117495..127117555 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017708.1chromosomeCM017708.1:64320163..64320223 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017695.1chromosomeCM017695.1:118073307..118073367 -Gossypium darwinii (AD5) genome HGS_v1.1
D08chromosomeD08:67478037..67478097 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A08chromosomeA08:125509115..125509175 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:130047532..130047592 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr08chromosomeChr08:130857635..130857695 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr08chromosomeChr08:60818727..60818787 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr04chromosomeChr04:62477535..62477595 -Gossypium thurberi (D1-5) genome CRI_v1
Chr04chromosomeChr04:64673875..64673935 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr04chromosomeChr04:41641299..41641359 -Gossypium aridum (D4) genome ISU_v1
Chr04chromosomeChr04:35168652..35168712 -Gossypium gossypioides (D6) genome ISU_v1
Chr04chromosomeChr04:42890896..42890956 -Gossypium lobatum (D7) genome ISU_v1
F08chromosomeF08:102852537..102852597 -Gossypium longicalyx (F1) genome NSF_v1
Chr08chromosomeChr08:2335470..2335530 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr04chromosomeUCD_cg10297_94:1..61 .
Chr04:60393833..60393893 -
Sequence
>UCD_cg10297_94 ID=UCD_cg10297_94; Name=UCD_cg10297_94; organism=Gossypium spp.; type=genetic_marker; length=65bp
AAATGAAAATTGCTTAACAGCAAAAACAAG[C/T]AAATTTCGGGATTAA
AAGTTACTCAGATGG